Research workbench
Crystals structure of classical swine fever virus NS5B (residues 1- 682)
Analyse Crystals structure of classical swine fever virus NS5B (residues 1- 682) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YF6
- Type
- protein
- Length
- 646 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rdrp catalytic
- UniProt
- Q5U8X5
- Pockets
- 7 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rdrp catalytic | protein | 646 | 46% helix, 16% strand | Q5U8X5 |
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 764 | 0.83 | 0.86 | 82 | empty |
| 2 | 404 | 0.72 | 0.83 | 40 | empty |
| 3 | 168 | 0.45 | 0.75 | 21 | empty |
| 4 | 133 | 0.45 | 0.77 | 19 | empty |
| 5 | 88 | 0.40 | 0.77 | 17 | empty |
Compared structures
- 5YF6 · Crystals structure of Classical swine fever virus NS5B (residues 1-682) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5U8X5
- Elsewhere: RCSB PDB 5YF6 · PDBe 5YF6 · UniProt Q5U8X5
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