Research workbench
Crystals structure of classical swine fever virus NS5B (residues 1- 694)
Analyse Crystals structure of classical swine fever virus NS5B (residues 1- 694) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YF5
- Type
- protein
- Length
- 641 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Rdrp catalytic
- UniProt
- Q5U8X5
- Pockets
- 7 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Rdrp catalytic | protein | 641 | 46% helix, 16% strand | Q5U8X5 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1003 | 0.82 | 0.83 | 99 | empty |
| 2 | 262 | 0.50 | 0.74 | 31 | empty |
| 3 | 107 | 0.42 | 0.77 | 19 | empty |
| 4 | 96 | 0.40 | 0.77 | 19 | empty |
| 5 | 98 | 0.37 | 0.74 | 15 | empty |
Compared structures
- 5YF5 · Crystals structure of Classical swine fever virus NS5B (residues 1-694) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5U8X5
- Elsewhere: RCSB PDB 5YF5 · PDBe 5YF5 · UniProt Q5U8X5
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