Research workbench
Structure of R354_WT
Analyse Structure of R354_WT in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YET
- Type
- protein
- Length
- 794 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein R354
- UniProt
- Q5UQV1
- Pockets
- 12 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein R354 | protein | 397 | 44% helix, 17% strand | Q5UQV1 |
| B | Uncharacterized protein R354 | protein | 397 | 44% helix, 17% strand | Q5UQV1 |
Pockets
12 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 669 | 0.67 | 0.76 | 54 | empty |
| 2 | 525 | 0.63 | 0.75 | 49 | empty |
| 3 | 164 | 0.47 | 0.77 | 22 | empty |
| 4 | 115 | 0.41 | 0.76 | 19 | empty |
| 5 | 112 | 0.35 | 0.73 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 1174 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5YET · Structure of R354_WT · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5UQV1
- Elsewhere: RCSB PDB 5YET · PDBe 5YET · UniProt Q5UQV1
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