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Full-length structure of hypt from salmonella typhimuriuma (hypochlorite-specific lysr-type transcriptional regulator)

Analyse Full-length structure of hypt from salmonella typhimuriuma… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5YDW
Type: protein
Length: 582 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cell density-dependent motility repressor
UniProt: A0A0J5DK07
Pockets: 10 · best druggability 0.64

Structure

x-ray diffraction · 2 distinct chains · 42% helix, 22% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cell density-dependent motility repressor	protein	293	40% helix, 23% strand	A0A0J5DK07
B	Cell density-dependent motility repressor	protein	289	44% helix, 20% strand	A0A0J5DK07

Pockets

10 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	433	0.64	0.77	60	empty
2	182	0.61	0.83	20	empty
3	345	0.58	0.76	50	empty
4	168	0.47	0.76	23	empty
5	88	0.38	0.76	20	empty

Interfaces

1 interface between chains.

A–B · 2325 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

5YDW · Full-length structure of HypT from Salmonella typhimuriuma (hypochlorite-specific… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

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Every structure of UniProt A0A0J5DK07
Elsewhere: RCSB PDB 5YDW · PDBe 5YDW · UniProt A0A0J5DK07

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