Research workbench
Crystal structure of the arabidopsis thaliana chloroplast RNA editing factors 2(MORF2)
Analyse Crystal structure of the arabidopsis thaliana chloroplast RNA editing factors… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5YDG
- Type
- protein
- Length
- 230 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Multiple organellar RNA editing factor 2, chloroplastic
- UniProt
- O22793
- Pockets
- 3 · best druggability 0.68
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Multiple organellar RNA editing factor 2, chloroplastic | protein | 114 | 36% helix, 29% strand | O22793 |
| B | Multiple organellar RNA editing factor 2, chloroplastic | protein | 116 | 35% helix, 28% strand | O22793 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 621 | 0.68 | 0.77 | 53 | empty |
| 2 | 151 | 0.48 | 0.77 | 27 | empty |
| 3 | 78 | 0.36 | 0.77 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 470 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5YDG · Crystal structure of the Arabidopsis thaliana chloroplast RNA editing factors 2(MORF2) · the same entry in another collection · chain A against A, TM-score 1.00
- O22793 · AlphaFold monomer V2.0 prediction for multiple organellar RNA editing factor 2… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O22793
- Elsewhere: RCSB PDB 5YDG · PDBe 5YDG · UniProt O22793
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.