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Solution structure of mice met-CCL5/RANTES

Analyse Solution structure of mice met-CCL5/RANTES in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5YAM
Type: protein
Length: 138 residues
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: C-C motif chemokine 5
UniProt: P30882
Pockets: 3 · best druggability 0.67

Structure

solution nmr · 1 distinct chain · 14% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	C-C motif chemokine 5	protein	69	14% helix, 26% strand	P30882

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	62	0.67	0.94	17	empty
2	120	0.56	0.83	24	empty
3	57	0.28	0.74	15	empty

Interfaces

1 interface between chains.

A–B · 806 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

5YAM · Solution structure of mice Met-CCL5/RANTES · the same entry in another collection · chain A against A, TM-score 1.00
P30882 · AlphaFold monomer V2.0 prediction for C-C motif chemokine 5 (P30882) · a predicted model of the same protein · chain B against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P30882
Elsewhere: RCSB PDB 5YAM · PDBe 5YAM · UniProt P30882

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