Research workbench
Quaternary complex of asqj-FE3+-2OG-D-cyclopeptin
Analyse Quaternary complex of asqj-FE3+-2OG-D-cyclopeptin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Y7T
- Type
- protein
- Length
- 287 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q5AR53
- Ligands
- 8R0, AKG, FE
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | — | protein | 287 | — | Q5AR53 |
Ligands and binding sites
- 8R0 · (3R)-4-methyl-3-(phenylmethyl)-1,3-dihydro-1,4-benzodiazepine-2,5-dione · ligand · chains B
- AKG · 2-oxoglutaric acid · ligand · chains B
- FE · Fe (III) ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5Y7T · Quaternary complex of AsqJ-Fe3+-2OG-D-cyclopeptin · the same entry in another collection · chain B against B, TM-score 1.00
- Q5AR53 · AlphaFold monomer V2.0 prediction for IRON/ALPHA-ketoglutarate- dependent dioxygenase… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5AR53
- Elsewhere: RCSB PDB 5Y7T · PDBe 5Y7T · UniProt Q5AR53
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