Research workbench
Crystal structure of enterococcus faecalis ahpc
Analyse Crystal structure of enterococcus faecalis ahpc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Y63
- Type
- protein
- Length
- 832 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alkyl hydroperoxide reductase, C subunit
- UniProt
- H7C7A0
- Pockets
- 6 · best druggability 0.67
Structure
x-ray diffraction · 3 distinct chains · 33% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, D | Alkyl hydroperoxide reductase, C subunit | protein | 167 | 34% helix, 28% strand | H7C7A0 |
| B | Alkyl hydroperoxide reductase, C subunit | protein | 166 | 33% helix, 27% strand | H7C7A0 |
| E | Alkyl hydroperoxide reductase, C subunit | protein | 165 | 33% helix, 27% strand | H7C7A0 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 77 | 0.67 | 0.93 | 29 | empty |
| 2 | 293 | 0.57 | 0.77 | 41 | empty |
| 3 | 329 | 0.57 | 0.76 | 42 | empty |
| 4 | 140 | 0.43 | 0.75 | 20 | empty |
| 5 | 69 | 0.30 | 0.74 | 21 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1321 Ų buried · 21 hydrogen bonds · protein-protein
- C–D · 1249 Ų buried · 18 hydrogen bonds · protein-protein
- B–C · 667 Ų buried · 7 hydrogen bonds · protein-protein
- D–E · 665 Ų buried · 3 hydrogen bonds · protein-protein
- C–E · 51 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5Y63 · Crystal structure of Enterococcus faecalis AhpC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H7C7A0
- Elsewhere: RCSB PDB 5Y63 · PDBe 5Y63 · UniProt H7C7A0
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