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Crystal structure of human sirtuin 2 in complex with a selective inhibitor

Analyse Crystal structure of human sirtuin 2 in complex with a selective inhibitor in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5Y5N
Type: protein
Length: 288 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NAD-dependent protein deacetylase sirtuin-2
EC: 3.5.1.-
UniProt: Q8IXJ6
Ligands: 8NO, ZN
Pockets: 2 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NAD-dependent protein deacetylase sirtuin-2 (EC 3.5.1.-)	protein	288	42% helix, 17% strand	Q8IXJ6

Ligands and binding sites

8NO · 2-[[3-(2-phenylethoxy)phenyl]amino]benzamide · ligand · chains A
ZN · Zinc ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	271	0.76	0.88	42	8NO
2	148	0.45	0.76	24	empty

Compared structures

5Y5N · Crystal structure of human Sirtuin 2 in complex with a selective inhibitor · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8IXJ6
Elsewhere: RCSB PDB 5Y5N · PDBe 5Y5N · UniProt Q8IXJ6

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