Research workbench
Apo structure of AMBP3
Analyse Apo structure of AMBP3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Y4G
- Type
- protein
- Length
- 587 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AMBP3
- UniProt
- V5TDY7
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AMBP3 | protein | 295 | 35% helix, 26% strand | V5TDY7 |
| B | AMBP3 | protein | 292 | 37% helix, 27% strand | V5TDY7 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 291 | 0.75 | 0.87 | 34 | empty |
| 2 | 301 | 0.75 | 0.87 | 38 | empty |
| 3 | 204 | 0.68 | 0.86 | 31 | empty |
| 4 | 579 | 0.65 | 0.76 | 77 | empty |
Interfaces
1 interface between chains.
- A–B · 327 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5Y4G · Apo Structure of AmbP3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V5TDY7
- Elsewhere: RCSB PDB 5Y4G · PDBe 5Y4G · UniProt V5TDY7
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