Research workbench
Crystal structure of a collagen-like peptide with interruption sequence
Analyse Crystal structure of a collagen-like peptide with interruption sequence in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Y45
- Type
- protein
- Length
- 162 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Collagen-like peptide
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Collagen-like peptide | protein | 27 | 0% helix, 0% strand | — |
Interfaces
14 interfaces between chains.
- E–F · 814 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 806 Ų buried · 7 hydrogen bonds · protein-protein
- A–C · 804 Ų buried · 10 hydrogen bonds · protein-protein
- D–F · 797 Ų buried · 10 hydrogen bonds · protein-protein
- A–B · 794 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 54 modified (hydroxylation).
Compared structures
- 5Y45 · Crystal structure of a collagen-like peptide with interruption sequence · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5Y45 · PDBe 5Y45
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