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Crystal structure of alginate lyase from flavobacterium sp. umi-01 reveals polymannuronate specificity

Analyse Crystal structure of alginate lyase from flavobacterium sp. umi-01 reveals… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5Y33
Type: protein
Length: 260 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alginate lyase
UniProt: A0A068PC91
Pockets: 1 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 46% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alginate lyase	protein	260	13% helix, 46% strand	A0A068PC91

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	413	0.62	0.77	46	empty

Compared structures

5Y33 · Crystal structure of alginate lyase from Flavobacterium sp. UMI-01 reveals… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A068PC91
Elsewhere: RCSB PDB 5Y33 · PDBe 5Y33 · UniProt A0A068PC91

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