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Monomeric L-threonine 3-dehydrogenase from metagenome database (NAD+ bound form)

Analyse Monomeric L-threonine 3-dehydrogenase from metagenome database (NAD+ bound form) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5Y1F
Type: protein
Length: 311 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: NAD dependent EPIMERASE/DEHYDRATASE family
UniProt: D6PBM7
Ligands: NAD
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NAD dependent EPIMERASE/DEHYDRATASE family	protein	311	46% helix, 18% strand	D6PBM7

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	381	0.74	0.85	44	NAD

Compared structures

5Y1F · Monomeric L-threonine 3-dehydrogenase from metagenome database (NAD+ bound form) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D6PBM7
Elsewhere: RCSB PDB 5Y1F · PDBe 5Y1F · UniProt D6PBM7

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