Research workbench
Crystal structure of apo bstmcal
Analyse Crystal structure of apo bstmcal in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5Y0O
- Type
- protein
- Length
- 828 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0348 protein B4417_3650
- UniProt
- A0A164SIT4
- Pockets
- 9 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | UPF0348 protein B4417_3650 | protein | 414 | 51% helix, 12% strand | A0A164SIT4 |
Pockets
9 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 489 | 0.82 | 0.89 | 47 | empty |
| 2 | 615 | 0.78 | 0.83 | 65 | empty |
| 3 | 389 | 0.66 | 0.79 | 46 | empty |
| 4 | 200 | 0.48 | 0.75 | 26 | empty |
| 5 | 114 | 0.43 | 0.77 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1154 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 5Y0O · Crystal structure of apo BsTmcAL · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A164SIT4
- Elsewhere: RCSB PDB 5Y0O · PDBe 5Y0O · UniProt A0A164SIT4
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