Research workbench
Staphylococcal enterotoxin B (seb) mutant S19 - N23A, Y90A, R110A and F177A
Analyse Staphylococcal enterotoxin B (seb) mutant S19 - N23A, Y90A, R110A and F177A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5XZ0
- Type
- protein
- Length
- 444 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Staphylococcal enterotoxin B
- UniProt
- A0A0H2WZB2
- Pockets
- 6 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 19% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Staphylococcal enterotoxin B | protein | 222 | 19% helix, 40% strand | A0A0H2WZB2 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 288 | 0.52 | 0.75 | 47 | empty |
| 2 | 63 | 0.32 | 0.76 | 23 | empty |
| 3 | 73 | 0.32 | 0.74 | 15 | empty |
| 4 | 77 | 0.29 | 0.72 | 16 | empty |
| 5 | 50 | 0.29 | 0.76 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 260 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5XZ0 · Staphylococcal Enterotoxin B (SEB) mutant S19 - N23A, Y90A, R110A and F177A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H2WZB2
- Elsewhere: RCSB PDB 5XZ0 · PDBe 5XZ0 · UniProt A0A0H2WZB2
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