Research workbench
NMR solution structure of the anticodon of yeast tRNA-phe with 3 modifications (OMC32 OMG34 M5C40)
Analyse NMR solution structure of the anticodon of yeast tRNA-phe with 3 modifications… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1LUX
- Type
- RNA
- Length
- 17 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC) P*UP*GP*G)-3'
- Pockets
- 1 · best druggability 0.28
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*GP*AP*UP*(5MC) P*UP*GP*G)-3' | rna | 17 | — | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 67 | 0.28 | 0.73 | 11 | empty |
Modifications
Observed in the structure: 3 modified (nucleotide modification).
Compared structures
- 1LUX · NMR solution structure of the anticodon of yeast tRNA-phe with 3 modifications (OMC32… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1LUX · PDBe 1LUX
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