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Crystal structure of 11S allergen from cocos nucifera L.

Analyse Crystal structure of 11S allergen from cocos nucifera L. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5XTY
Type: protein
Length: 715 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 11S globulin isoform 1
UniProt: A0A0R7UCU5
Pockets: 11 · best druggability 0.79

Structure

x-ray diffraction · 2 distinct chains · 12% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	11S globulin isoform 1	protein	359	11% helix, 36% strand	A0A0R7UCU5
B	11S globulin isoform 1	protein	356	13% helix, 38% strand	A0A0R7UCU5

Pockets

11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	108	0.79	0.98	26	empty
2	666	0.76	0.82	85	empty
3	52	0.73	0.99	20	empty
4	72	0.68	0.94	19	empty
5	383	0.65	0.79	50	empty

Interfaces

1 interface between chains.

A–B · 2051 Å² buried · 24 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

5XTY · Crystal Structure of 11S allergen from Cocos nucifera L. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0R7UCU5
Elsewhere: RCSB PDB 5XTY · PDBe 5XTY · UniProt A0A0R7UCU5

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