Research workbench

Crystal structure of the cis-dihydrodiol naphthalene dehydrogenase nahb from pseudomonas sp. MC1

Analyse Crystal structure of the cis-dihydrodiol naphthalene dehydrogenase nahb from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5XTF
Type: protein
Length: 457 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
UniProt: G9G7I7
Pockets: 4 · best druggability 0.60

Structure

x-ray diffraction · 2 distinct chains · 47% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase	protein	228	46% helix, 16% strand	G9G7I7
B	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase	protein	229	48% helix, 15% strand	G9G7I7

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	352	0.60	0.77	40	empty
2	299	0.58	0.77	37	empty
3	246	0.53	0.76	23	empty
4	104	0.38	0.75	21	empty

Interfaces

1 interface between chains.

A–B · 1418 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

5XTF · Crystal structure of the cis-dihydrodiol naphthalene dehydrogenase NahB from Pseudomonas… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G9G7I7
Elsewhere: RCSB PDB 5XTF · PDBe 5XTF · UniProt G9G7I7

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.