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Separate fitting of the anticodon loop region of tRNA (nucleotide 26- 42) in the low resolution cryo-EM MAP of an ef-tu ternary complex (GDP and kirromycin) bound to E. COLI 70S ribosome

Analyse Separate fitting of the anticodon loop region of tRNA (nucleotide 26- 42) in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1LU3
Type: RNA
Length: 17 nucleotides
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phenylalanine transfer RNA
Pockets: 1 · best druggability 0.38

Structure

electron microscopy · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phenylalanine transfer RNA	rna	17	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	144	0.38	0.73	15	empty

Modifications

Observed in the structure: 1 modified (nucleotide modification).

Compared structures

1LU3 · Separate Fitting of the Anticodon Loop Region of tRNA (nucleotide 26-42) in the Low… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1LU3 · PDBe 1LU3

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