Research workbench
NMR structure of the domain 5 of the E. COLI ribosomal protein S1
Analyse NMR structure of the domain 5 of the E. COLI ribosomal protein S1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5XQ5
- Type
- protein
- Length
- 94 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 30S ribosomal protein S1
- UniProt
- P0AG67
- Pockets
- 2 · best druggability 0.39
Structure
solution nmr · 1 distinct chain · 23% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 30S ribosomal protein S1 | protein | 94 | 23% helix, 17% strand | P0AG67 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 135 | 0.39 | 0.73 | 20 | empty |
| 2 | 85 | 0.36 | 0.75 | 18 | empty |
Compared structures
- 5XQ5 · NMR structure of the domain 5 of the E. coli ribosomal protein S1 · the same entry in another collection · chain A against A, TM-score 1.00
- P0AG67 · AlphaFold monomer V2.0 prediction for 30S ribosomal protein S1 (P0AG67) · a predicted model of the same protein · chain A against A, TM-score 0.48
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AG67
- Elsewhere: RCSB PDB 5XQ5 · PDBe 5XQ5 · UniProt P0AG67
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