Research workbench
Crystal structure of the isochorismatase domain of angb from vibrio anguillarum 775
Analyse Crystal structure of the isochorismatase domain of angb from vibrio anguillarum… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5XO0
- Type
- protein
- Length
- 418 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ischorismate lyase
- UniProt
- Q6W4P9
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ischorismate lyase | protein | 209 | 38% helix, 19% strand | Q6W4P9 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.75 | 0.96 | 20 | empty |
| 2 | 92 | 0.74 | 0.96 | 20 | empty |
| 3 | 218 | 0.56 | 0.79 | 19 | empty |
| 4 | 55 | 0.28 | 0.74 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1474 Ų buried · 15 hydrogen bonds · protein-protein
Compared structures
- 5XO0 · Crystal structure of the isochorismatase domain of AngB from Vibrio anguillarum 775 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6W4P9
- Elsewhere: RCSB PDB 5XO0 · PDBe 5XO0 · UniProt Q6W4P9
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