Research workbench
Crystal structure of YEATS2 yeats bound to H3K27AC peptide
Analyse Crystal structure of YEATS2 yeats bound to H3K27AC peptide in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5XNV
- Type
- protein
- Length
- 140 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Yeats domain-containing protein 2; Ala-ala-arg-aly-ser-ala-pro-ala
- UniProt
- Q9ULM3
- Ligands
- NH4, CL
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Yeats domain-containing protein 2 | protein | 132 | 7% helix, 51% strand | Q9ULM3 |
| B | Ala-ala-arg-aly-ser-ala-pro-ala | protein | 8 | 0% helix, 13% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 448 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 modified (acetylation).
Compared structures
- 5XNV · Crystal structure of YEATS2 YEATS bound to H3K27ac peptide · the same entry in another collection · chain A against A, TM-score 1.00
- Q9ULM3 · AlphaFold monomer V2.0 prediction for yeats domain-containing protein 2 (Q9ULM3) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9ULM3
- Elsewhere: RCSB PDB 5XNV · PDBe 5XNV · UniProt Q9ULM3
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