Research workbench
Crystal structure of sprlmcd
Analyse Crystal structure of sprlmcd in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5XJ1
- Type
- protein
- Length
- 453 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized RNA methyltransferase SP_1029
- EC
- 2.1.1.-
- UniProt
- Q97R12
- Pockets
- 4 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized RNA methyltransferase SP_1029 (EC 2.1.1.-) | protein | 453 | 26% helix, 33% strand | Q97R12 |
Ligands and binding sites
- GOL · Glycerol · additive · 2 copies · chains A
- P6G · Hexaethylene glycol · additive · chains A
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 568 | 0.66 | 0.76 | 78 | P6G, EPE |
| 2 | 134 | 0.44 | 0.76 | 19 | empty |
| 3 | 54 | 0.31 | 0.76 | 11 | empty |
| 4 | 69 | 0.29 | 0.73 | 18 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q97R12
- Elsewhere: RCSB PDB 5XJ1 · PDBe 5XJ1 · UniProt Q97R12
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.