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Crystal structure analysis of the second bromodomain of BRD2 covalently linked to B-mercaptoethanol

Analyse Crystal structure analysis of the second bromodomain of BRD2 covalently linked… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5XHE
Type
protein
Length
113 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Bromodomain-containing protein 2
UniProt
P25440

Structure

x-ray diffraction · 1 distinct chain · 68% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ABromodomain-containing protein 2protein11368% helix, 0% strandP25440

Ligands and binding sites

  • GOL · Glycerol · additive · 3 copies · chains A
  • PGE · Triethylene glycol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 modified (artifact).

Compared structures

  • 5XHE · Crystal structure analysis of the second bromodomain of BRD2 covalently linked to… · the same entry in another collection · chain A against A, TM-score 1.00
  • P25440 · AlphaFold monomer V2.0 prediction for bromodomain-containing protein 2 (P25440) · a predicted model of the same protein · chain A against A, TM-score 0.96

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