Research workbench
Aspergillus kawachii beta-fructofuranosidase
Analyse Aspergillus kawachii beta-fructofuranosidase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5XH9
- Type
- protein
- Length
- 604 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extracellular invertase
- UniProt
- G7XM46
- Ligands
- NA
- Pockets
- 5 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extracellular invertase | protein | 604 | 7% helix, 45% strand | G7XM46 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 411 | 0.67 | 0.80 | 32 | empty |
| 2 | 187 | 0.51 | 0.77 | 26 | empty |
| 3 | 107 | 0.38 | 0.75 | 29 | empty |
| 4 | 76 | 0.33 | 0.75 | 23 | empty |
| 5 | 58 | 0.31 | 0.76 | 10 | empty |
Compared structures
- 5XH9 · Aspergillus kawachii beta-fructofuranosidase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G7XM46
- Elsewhere: RCSB PDB 5XH9 · PDBe 5XH9 · UniProt G7XM46
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