Research workbench
Three-dimensional structures of the periplasmic lysine-, arginine-, ornithine-binding protein with and without a ligand
Analyse Three-dimensional structures of the periplasmic lysine-, arginine… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1LST
- Type
- protein
- Length
- 238 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysine, arginine, ornithine-binding protein
- UniProt
- P02911
- Ligands
- LYS
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysine, arginine, ornithine-binding protein | protein | 238 | 39% helix, 22% strand | P02911 |
Ligands and binding sites
- LYS · Lysine · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 86 | 0.42 | 0.78 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 1LST · Three-dimensional structures of the periplasmic lysine-, arginine-, ornithine-binding… · the same entry in another collection · chain A against A, TM-score 1.00
- P02911 · AlphaFold monomer V2.0 prediction for LYSINE/ARGININE/ORNITHINE- binding periplasmic… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02911
- Elsewhere: RCSB PDB 1LST · PDBe 1LST · UniProt P02911
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