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The crystal structure of a bulgecin-inhibited G-type lysozyme from the egg-white of the australian black swan. a comparison of the binding of bulgecin to three muramidases
Analyse The crystal structure of a bulgecin-inhibited G-type lysozyme from the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1LSP
- Type
- protein
- Length
- 185 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme
- EC
- 3.2.1.17
- UniProt
- P00717
- Ligands
- BUL
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme (EC 3.2.1.17) | protein | 185 | 53% helix, 4% strand | P00717 |
Ligands and binding sites
- BUL · Bulgecin A · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 276 | 0.54 | 0.76 | 37 | BUL |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 1LSP · The crystal structure of a bulgecin-inhibited G-type lysozyme from the egg-white of the… · the same entry in another collection · chain A against A, TM-score 1.00
- P00717 · AlphaFold monomer V2.0 prediction for lysozyme G (P00717) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00717
- Elsewhere: RCSB PDB 1LSP · PDBe 1LSP · UniProt P00717
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