Research workbench
Crystal structure of secdf in I form at 4 a resolution
Analyse Crystal structure of secdf in I form at 4 a resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5XAM
- Type
- protein
- Length
- 1,411 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein translocase subunit secd
- UniProt
- Q9RTE3
- Pockets
- 20 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 55% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein translocase subunit secd | protein | 727 | 55% helix, 6% strand | Q9RTE3 |
| B | Protein translocase subunit secd | protein | 684 | 54% helix, 7% strand | Q9RTE3 |
Pockets
20 pockets found on a 1 Å grid, 18 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1098 | 0.84 | 0.85 | 124 | empty |
| 2 | 566 | 0.82 | 0.88 | 75 | empty |
| 3 | 607 | 0.80 | 0.86 | 64 | empty |
| 4 | 658 | 0.79 | 0.84 | 64 | empty |
| 5 | 272 | 0.77 | 0.89 | 51 | empty |
Interfaces
1 interface between chains.
- A–B · 149 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5XAM · Crystal structure of SecDF in I form at 4 A resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RTE3
- Elsewhere: RCSB PDB 5XAM · PDBe 5XAM · UniProt Q9RTE3
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