Research workbench
A membrane protein complex
Analyse A membrane protein complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5X5Y
- Type
- protein
- Length
- 1,180 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable ATP-binding component of ABC transporter; Uncharacterized protein
- UniProt
- Q9HVV6, Q9HXH5, Q9HXH4
- Pockets
- 20 · best druggability 0.78
Structure
x-ray diffraction · 3 distinct chains · 53% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | Probable ATP-binding component of ABC transporter | protein | 239 | 36% helix, 26% strand | Q9HVV6 |
| G | Uncharacterized protein | protein | 351 | 61% helix, 14% strand | Q9HXH5 |
| F | Uncharacterized protein | protein | 351 | 56% helix, 13% strand | Q9HXH4 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 961 | 0.78 | 0.79 | 93 | empty |
| 2 | 55 | 0.70 | 0.98 | 20 | empty |
| 3 | 450 | 0.70 | 0.81 | 41 | empty |
| 4 | 524 | 0.69 | 0.79 | 62 | empty |
| 5 | 524 | 0.67 | 0.78 | 50 | empty |
Interfaces
4 interfaces between chains.
- G–F · 1637 Ų buried · 10 hydrogen bonds · protein-protein
- B–F · 1071 Ų buried · 14 hydrogen bonds · protein-protein
- A–G · 1001 Ų buried · 8 hydrogen bonds · protein-protein
- B–A · 722 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 5X5Y · A membrane protein complex · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HVV6
- Every structure of UniProt Q9HXH5
- Every structure of UniProt Q9HXH4
- Elsewhere: RCSB PDB 5X5Y · PDBe 5X5Y · UniProt Q9HVV6 · UniProt Q9HXH5 · UniProt Q9HXH4
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