Research workbench
Roseoflavin substituted oapac
Analyse Roseoflavin substituted oapac in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5X4V
- Type
- protein
- Length
- 350 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Photoactivated adenylyl cyclase
- Ligands
- RS3
- Pockets
- 5 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Photoactivated adenylyl cyclase | protein | 350 | 44% helix, 30% strand | — |
Ligands and binding sites
- RS3 · 1-deoxy-1-[8-(dimethylamino)-7-methyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl]-D-ribitol · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 161 | 0.63 | 0.85 | 19 | RS3 |
| 2 | 77 | 0.44 | 0.81 | 20 | empty |
| 3 | 115 | 0.37 | 0.73 | 19 | empty |
| 4 | 78 | 0.32 | 0.73 | 15 | empty |
| 5 | 66 | 0.30 | 0.75 | 15 | empty |
Compared structures
- 5X4V · Roseoflavin substituted OaPAC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5X4V · PDBe 5X4V
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