Research workbench
2.8A resolution structure of a cobalt energy-coupling factor transporter-cbimqo
Analyse 2.8A resolution structure of a cobalt energy-coupling factor transporter-cbimqo in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5X3X
- Type
- protein
- Length
- 2,016 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cobalt ABC transporter ATP-binding protein; Cobalt transport protein cbim…
- UniProt
- A0A0Q0R232
- Pockets
- 20 · best druggability 0.82
Structure
x-ray diffraction · 6 distinct chains · 62% helix, 10% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, b | Cobalt ABC transporter ATP-binding protein | protein | 280 | 43% helix, 23% strand | — |
| M | Cobalt transport protein cbim | protein | 207 | 74% helix, 3% strand | A0A0Q0R232 |
| Q | Uncharacterized protein cbiq | protein | 243 | 71% helix, 3% strand | — |
| a | Cobalt ABC transporter ATP-binding protein | protein | 279 | 43% helix, 23% strand | — |
| m | Cobalt transport protein cbim | protein | 205 | 73% helix, 1% strand | A0A0Q0R232 |
| q | Uncharacterized protein cbiq | protein | 242 | 74% helix, 1% strand | — |
Pockets
20 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 982 | 0.82 | 0.83 | 67 | empty |
| 2 | 816 | 0.81 | 0.84 | 66 | empty |
| 3 | 326 | 0.75 | 0.87 | 55 | empty |
| 4 | 364 | 0.72 | 0.83 | 52 | empty |
| 5 | 581 | 0.70 | 0.78 | 45 | empty |
Interfaces
10 interfaces between chains.
- M–Q · 3120 Ų buried · 12 hydrogen bonds · protein-protein
- m–q · 3031 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 1668 Ų buried · 25 hydrogen bonds · protein-protein
- B–Q · 1652 Ų buried · 14 hydrogen bonds · protein-protein
- b–q · 1639 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 5X3X · 2.8A resolution structure of a cobalt energy-coupling factor transporter-CbiMQO · the same entry in another collection · chain Q against Q, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0Q0R232
- Elsewhere: RCSB PDB 5X3X · PDBe 5X3X · UniProt A0A0Q0R232
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