Research workbench
KFLA1895 D451A mutant
Analyse KFLA1895 D451A mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5X3I
- Type
- protein
- Length
- 1,417 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glycoside hydrolase family 31
- UniProt
- D2PPM7
- Ligands
- SO4
- Pockets
- 13 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glycoside hydrolase family 31 | protein | 708 | 26% helix, 26% strand | D2PPM7 |
| B | Glycoside hydrolase family 31 | protein | 709 | 27% helix, 26% strand | D2PPM7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
13 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 480 | 0.77 | 0.85 | 59 | GOL |
| 2 | 558 | 0.72 | 0.80 | 59 | GOL |
| 3 | 616 | 0.71 | 0.79 | 52 | empty |
| 4 | 589 | 0.71 | 0.79 | 49 | empty |
| 5 | 429 | 0.68 | 0.80 | 48 | GOL |
Interfaces
1 interface between chains.
- A–B · 765 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2PPM7
- Elsewhere: RCSB PDB 5X3I · PDBe 5X3I · UniProt D2PPM7
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