Research workbench
Alkylquinolone synthase from evodia rutaecarpa
Analyse Alkylquinolone synthase from evodia rutaecarpa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5WX4
- Type
- protein
- Length
- 1,174 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alkylquinolone synthase
- Pockets
- 9 · best druggability 0.75
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alkylquinolone synthase | protein | 392 | 43% helix, 23% strand | — |
| B, C | Alkylquinolone synthase | protein | 391 | 43% helix, 24% strand | — |
Pockets
9 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 254 | 0.75 | 0.88 | 39 | empty |
| 2 | 262 | 0.74 | 0.87 | 51 | empty |
| 3 | 286 | 0.74 | 0.86 | 45 | empty |
| 4 | 69 | 0.73 | 0.97 | 28 | empty |
| 5 | 50 | 0.69 | 0.98 | 16 | empty |
Interfaces
2 interfaces between chains.
- B–C · 3109 Ų buried · 45 hydrogen bonds · protein-protein
- A–B · 123 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 5WX4 · Alkylquinolone synthase from Evodia rutaecarpa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5WX4 · PDBe 5WX4
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