Research workbench
Expression, characterization and crystal structure of a novel beta- glucosidase from paenibacillus barengoltzii
Analyse Expression, characterization and crystal structure of a novel beta- glucosidase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5WUG
- Type
- protein
- Length
- 930 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-glucosidase
- EC
- 3.2.1.21
- UniProt
- A0A1P8VKA0
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-glucosidase (EC 3.2.1.21) | protein | 930 | 26% helix, 28% strand | A0A1P8VKA0 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 977 | 0.75 | 0.78 | 119 | empty |
| 2 | 356 | 0.69 | 0.82 | 54 | empty |
| 3 | 100 | 0.42 | 0.78 | 25 | empty |
| 4 | 50 | 0.25 | 0.73 | 17 | empty |
Compared structures
- 5WUG · Expression, characterization and crystal structure of a novel beta-glucosidase from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1P8VKA0
- Elsewhere: RCSB PDB 5WUG · PDBe 5WUG · UniProt A0A1P8VKA0
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