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Crystal structure of T-hg-T pair containing DNA duplex in the presence BA2+

Analyse Crystal structure of T-hg-T pair containing DNA duplex in the presence BA2+ in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
5WSS
Type
DNA
Length
8 nucleotides
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
DNA (5'-D(*GP*GP*TP*CP*GP*TP*CP*C)-3')
Ligands
HG, BA

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
ADNA (5'-D(*GP*GP*TP*CP*GP*TP*CP*C)-3')dna8——

Ligands and binding sites

  • HG · Mercury (II) ion · metal · chains A
  • BA · Barium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 5WSS · Crystal structure of T-Hg-T pair containing DNA duplex in the presence Ba2+ · the same entry in another collection · chain A against A, TM-score 1.00

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