Research workbench
Crystal structure of osmc like protein from mycoplasma pneumoniae
Analyse Crystal structure of osmc like protein from mycoplasma pneumoniae in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1LQL
- Type
- protein
- Length
- 1,432 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Osmotical inducible protein C like family
- UniProt
- P75170
- Pockets
- 10 · best druggability 0.84
Structure
x-ray diffraction · 3 distinct chains · 32% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, E, G, H | Osmotical inducible protein C like family | protein | 141 | 34% helix, 35% strand | P75170 |
| C, D, F, I | Osmotical inducible protein C like family | protein | 146 | 31% helix, 34% strand | P75170 |
| J | Osmotical inducible protein C like family | protein | 143 | 31% helix, 34% strand | P75170 |
Pockets
10 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 993 | 0.84 | 0.85 | 101 | empty |
| 2 | 615 | 0.72 | 0.79 | 71 | empty |
| 3 | 599 | 0.67 | 0.77 | 61 | empty |
| 4 | 279 | 0.61 | 0.79 | 35 | empty |
| 5 | 315 | 0.61 | 0.78 | 39 | empty |
Interfaces
18 interfaces between chains.
- C–D · 3243 Ų buried · 45 hydrogen bonds · protein-protein
- I–J · 3229 Ų buried · 46 hydrogen bonds · protein-protein
- E–F · 3151 Ų buried · 44 hydrogen bonds · protein-protein
- A–B · 3096 Ų buried · 43 hydrogen bonds · protein-protein
- G–H · 3087 Ų buried · 43 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 disulfide (disulfide).
Compared structures
- 1LQL · Crystal structure of OsmC like protein from Mycoplasma pneumoniae · the same entry in another collection · chain J against J, TM-score 1.00
- P75170 · AlphaFold monomer V2.0 prediction for hydroperoxide reductase (P75170) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P75170
- Elsewhere: RCSB PDB 1LQL · PDBe 1LQL · UniProt P75170
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