Research workbench
Solution structure of the yeast spliceosomal U2 snrna-intron branch site helix featuring a conserved pseudouridine
Analyse Solution structure of the yeast spliceosomal U2 snrna-intron branch site helix… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1LPW
- Type
- RNA
- Length
- 19 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-R(*GP*GP*UP*GP*(PSU)P*AP*GP*UP*A)-3'; 5'-R(*UP*AP*CP*UP*AP*AP*CP*AP*CP*C)-3'
Structure
solution nmr · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-R(*GP*GP*UP*GP*(PSU)P*AP*GP*UP*A)-3' | rna | 9 | — | — |
| B | 5'-R(*UP*AP*CP*UP*AP*AP*CP*AP*CP*C)-3' | rna | 10 | — | — |
Interfaces
1 interface between chains.
- A–B · 482 Ų buried · 52 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 1LPW · Solution structure of the yeast spliceosomal U2 snRNA-intron branch site helix featuring… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1LPW · PDBe 1LPW
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