Research workbench
High resolution structure of recombinant dianthin antiviral protein-potent anti-HIV agent
Analyse High resolution structure of recombinant dianthin antiviral protein-potent… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1LP8
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dianthin 30
- EC
- 3.2.2.22
- UniProt
- P24476
- Pockets
- 1 · best druggability 0.50
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dianthin 30 (EC 3.2.2.22) | protein | 254 | 38% helix, 23% strand | P24476 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 128 | 0.50 | 0.79 | 16 | empty |
Compared structures
- 1LP8 · High resolution structure of recombinant dianthin antiviral protein-potent anti-HIV agent · the same entry in another collection · chain A against A, TM-score 1.00
- P24476 · AlphaFold monomer V2.0 prediction for ribosome-inactivating protein dianthin-30 (P24476) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24476
- Elsewhere: RCSB PDB 1LP8 · PDBe 1LP8 · UniProt P24476
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