Research workbench
Crystal structure of the arabidopsis thaliana raptor
Analyse Crystal structure of the arabidopsis thaliana raptor in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5WBI
- Type
- protein
- Length
- 1,058 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Regulatory-associated protein of tor 1
- UniProt
- Q93YQ1
- Pockets
- 12 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Regulatory-associated protein of tor 1 | protein | 1058 | 39% helix, 19% strand | Q93YQ1 |
Pockets
12 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 909 | 0.84 | 0.86 | 79 | empty |
| 2 | 147 | 0.76 | 0.94 | 27 | empty |
| 3 | 509 | 0.64 | 0.76 | 43 | empty |
| 4 | 393 | 0.61 | 0.77 | 62 | empty |
| 5 | 176 | 0.56 | 0.80 | 27 | empty |
Compared structures
- 5WBI · Crystal structure of the Arabidopsis thaliana Raptor · the same entry in another collection · chain A against A, TM-score 1.00
- Q93YQ1 · AlphaFold monomer V2.0 prediction for regulatory-associated protein of tor 1 (Q93YQ1) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93YQ1
- Elsewhere: RCSB PDB 5WBI · PDBe 5WBI · UniProt Q93YQ1
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