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Crystal structure of sugarcane SAPK10 (SERINE/THREONINE-protein kinase 10)

Analyse Crystal structure of sugarcane SAPK10 (SERINE/THREONINE-protein kinase 10) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5WAX
Type: protein
Length: 553 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SAPK10 (SERINE/THREONINE-protein kinase 10)
Pockets: 7 · best druggability 0.68

Structure

x-ray diffraction · 2 distinct chains · 41% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SAPK10 (SERINE/THREONINE-protein kinase 10)	protein	279	41% helix, 16% strand	—
B	SAPK10 (SERINE/THREONINE-protein kinase 10)	protein	274	42% helix, 15% strand	—

Ligands and binding sites

GOL · Glycerol · additive · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	561	0.68	0.78	68	empty
2	171	0.46	0.75	22	empty
3	84	0.40	0.78	18	empty
4	61	0.36	0.78	17	empty
5	56	0.31	0.76	11	empty

Interfaces

1 interface between chains.

A–B · 937 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

5WAX · Crystal Structure of Sugarcane SAPK10 (serine/threonine-protein kinase 10) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5WAX · PDBe 5WAX

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