Research workbench
An envelope of a filamentous hyperthermophilic virus carries lipids in a horseshoe conformation
Analyse An envelope of a filamentous hyperthermophilic virus carries lipids in a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5W7G
- Type
- protein + DNA
- Length
- 5,901 residues
- Chains
- 44
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ORF140; ORF132; DNA (253-mer)
- UniProt
- Q70LC6, Q70LC7
- Pockets
- 20 · best druggability 0.85
Structure
electron microscopy · 3 distinct chains · 82% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, E, G, I, K, M, O, Q, S, U, W, Y, a, c, e, g, i, k, m, o | ORF140 | protein | 131 | 82% helix, 0% strand | Q70LC6 |
| B, D, F, H, J, L, N, P, R, T, V, X, Z, b, d, f, h, j, l, n, p | ORF132 | protein | 126 | 81% helix, 0% strand | Q70LC7 |
| q, r | DNA (253-mer) | dna | 252 | — | — |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 799 | 0.85 | 0.89 | 72 | empty |
| 2 | 491 | 0.82 | 0.89 | 50 | empty |
| 3 | 480 | 0.81 | 0.89 | 49 | empty |
| 4 | 371 | 0.78 | 0.89 | 26 | empty |
| 5 | 360 | 0.78 | 0.89 | 30 | empty |
Interfaces
209 interfaces between chains.
- q–r · 13626 Ų buried · 863 hydrogen bonds · nucleic-nucleic
- m–n · 847 Ų buried · 13 hydrogen bonds · protein-protein
- W–X · 846 Ų buried · 13 hydrogen bonds · protein-protein
- Y–Z · 845 Ų buried · 13 hydrogen bonds · protein-protein
- O–P · 844 Ų buried · 13 hydrogen bonds · protein-protein
Compared structures
- 5W7G · An envelope of a filamentous hyperthermophilic virus carries lipids in a horseshoe… · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q70LC6
- Every structure of UniProt Q70LC7
- Elsewhere: RCSB PDB 5W7G · PDBe 5W7G · UniProt Q70LC6 · UniProt Q70LC7
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