Research workbench
Crystal structure of bacteriophage CBA120 tailspike protein 3 (TSP3, ORF212)
Analyse Crystal structure of bacteriophage CBA120 tailspike protein 3 (TSP3, ORF212) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5W6F
- Type
- protein
- Length
- 1,848 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tailspike protein 3
- UniProt
- G3M191
- Ligands
- CL
- Pockets
- 19 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Tailspike protein 3 | protein | 616 | 11% helix, 43% strand | G3M191 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
19 pockets found on a 1 Å grid, 12 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1098 | 0.85 | 0.86 | 79 | empty |
| 2 | 1146 | 0.84 | 0.85 | 100 | empty |
| 3 | 62 | 0.75 | 1.00 | 15 | empty |
| 4 | 74 | 0.73 | 0.98 | 15 | empty |
| 5 | 82 | 0.73 | 0.97 | 21 | empty |
Interfaces
3 interfaces between chains.
- B–C · 4889 Ų buried · 72 hydrogen bonds · protein-protein
- A–C · 4885 Ų buried · 75 hydrogen bonds · protein-protein
- A–B · 4877 Ų buried · 71 hydrogen bonds · protein-protein
Compared structures
- 5W6F · Crystal structure of Bacteriophage CBA120 tailspike protein 3 (TSP3, orf212) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G3M191
- Elsewhere: RCSB PDB 5W6F · PDBe 5W6F · UniProt G3M191
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