Research workbench
Structure of apo aztc
Analyse Structure of apo aztc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5W56
- Type
- protein
- Length
- 540 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic solute binding protein
- UniProt
- A1B2F3
- Ligands
- NA
- Pockets
- 3 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic solute binding protein | protein | 275 | 46% helix, 16% strand | A1B2F3 |
| B | Periplasmic solute binding protein | protein | 265 | 50% helix, 14% strand | A1B2F3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 535 | 0.61 | 0.74 | 54 | empty |
| 2 | 56 | 0.48 | 0.85 | 13 | GOL |
| 3 | 52 | 0.29 | 0.76 | 11 | empty |
Interfaces
1 interface between chains.
- A–B · 831 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5W56 · Structure of Apo AztC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A1B2F3
- Elsewhere: RCSB PDB 5W56 · PDBe 5W56 · UniProt A1B2F3
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