Research workbench
X-ray crystallographic structure of a beta-hairpin peptide mimic. (ORN)KLV(MEA)FAE(ORN)AIIGLMV.
Analyse X-ray crystallographic structure of a beta-hairpin peptide mimic.… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5W4J
- Type
- protein
- Length
- 96 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- A-beta 17_36 peptide: orn-lys-val-phe-mea-ala-ala-asp-orn- ala-ile-ile-gly-leu-met-val
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 69% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | A-beta 17_36 peptide: orn-lys-val-phe-mea-ala-ala-asp-orn- ala-ile-ile-gly-leu-met-val | protein | 16 | 0% helix, 69% strand | — |
Interfaces
9 interfaces between chains.
- E–F · 331 Ų buried · 7 hydrogen bonds · protein-protein
- A–D · 308 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 301 Ų buried · 5 hydrogen bonds · protein-protein
- B–E · 287 Ų buried · 0 hydrogen bonds · protein-protein
- C–F · 258 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (nonstandard).
Compared structures
- 5W4J · X-ray crystallographic structure of a beta-hairpin peptide mimic.… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5W4J · PDBe 5W4J
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.