Research workbench
Crystal structure of mycobacterium tuberculosis kasa in complex with 6U5
Analyse Crystal structure of mycobacterium tuberculosis kasa in complex with 6U5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5W2P
- Type
- protein
- Length
- 414 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-oxoacyl-[acyl-carrier-protein] synthase 1
- EC
- 2.3.1.41
- UniProt
- H8ESN0
- Ligands
- 6U5, TCE, NA
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-oxoacyl-[acyl-carrier-protein] synthase 1 (EC 2.3.1.41) | protein | 414 | 39% helix, 20% strand | H8ESN0 |
Ligands and binding sites
- 6U5 · ~{N}-(1-methylindazol-6-yl)butane-1-sulfonamide · ligand · 2 copies · chains A
- TCE · 3,3',3''-phosphanetriyltripropanoic acid · ligand · chains A
- NA · Sodium ion · metal · chains A
- IPA · Isopropyl alcohol · additive · 3 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.64 | 0.88 | 34 | IPA |
| 2 | 208 | 0.57 | 0.79 | 27 | 6U5 |
Compared structures
- 5W2P · Crystal structure of Mycobacterium tuberculosis KasA in complex with 6U5 · the same entry in another collection · chain A against A, TM-score 1.00
- H8ESN0 · AlphaFold monomer V2.0 prediction for 3-oxoacyl-[acyl-carrier- protein] synthase 1… · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H8ESN0
- Elsewhere: RCSB PDB 5W2P · PDBe 5W2P · UniProt H8ESN0
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