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Crystal structure of campylobacter jejuni ycei protein that crystallizes with large solvent channels for nanotechnology applications

Analyse Crystal structure of campylobacter jejuni ycei protein that crystallizes with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5W17
Type: protein
Length: 171 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative periplasmic protein
UniProt: Q0PB90
Ligands: LFA, SO4
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative periplasmic protein	protein	171	11% helix, 48% strand	Q0PB90

Ligands and binding sites

LFA · Eicosane · ligand · chains A
SO4 · Sulfate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	549	0.75	0.81	44	LFA

Compared structures

5W17 · Crystal structure of Campylobacter jejuni YCEI protein that crystallizes with large… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0PB90
Elsewhere: RCSB PDB 5W17 · PDBe 5W17 · UniProt Q0PB90

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