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Crystal structure of lactococcus lactis pyruvate carboxylase in complex with cyclic-di-AMP

Analyse Crystal structure of lactococcus lactis pyruvate carboxylase in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5VYZ
Type: protein
Length: 4,513 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: A0A089XIW4
Ligands: ADP, 2BA, MN, MG

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	1144	—	A0A089XIW4
B	—	protein	1142	—	A0A089XIW4
C	—	protein	1083	—	A0A089XIW4
D	—	protein	1144	—	A0A089XIW4

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 4 copies · chains A, B, C, D
2BA · (2r,3r,3as,5r,7ar,9r,10r,10as,12r,14ar)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-D:3', 2'-J][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5, 10,12-tetrol 5,12-dioxide · ligand · 2 copies · chains A, B, C, D
MN · Manganese (II) ion · metal · 4 copies · chains A, B, C, D
MG · Magnesium ion · metal · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5VYZ · Crystal structure of Lactococcus lactis pyruvate carboxylase in complex with cyclic-di-AMP · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt A0A089XIW4
Elsewhere: RCSB PDB 5VYZ · PDBe 5VYZ · UniProt A0A089XIW4

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