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Crystal structure of N-terminal half of herpes simplex virus type 1 UL37 protein

Analyse Crystal structure of N-terminal half of herpes simplex virus type 1 UL37 protein in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5VYL
Type: protein
Length: 502 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Inner tegument protein
UniProt: P10221
Ligands: NA
Pockets: 6 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 65% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Inner tegument protein	protein	502	65% helix, 1% strand	P10221

Ligands and binding sites

NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.73	0.97	26	empty
2	191	0.49	0.76	27	empty
3	211	0.48	0.75	21	empty
4	145	0.42	0.75	30	empty
5	66	0.38	0.78	20	empty

Compared structures

5VYL · Crystal Structure of N-terminal half of Herpes Simplex virus Type 1 UL37 protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P10221
Elsewhere: RCSB PDB 5VYL · PDBe 5VYL · UniProt P10221

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