Research workbench
Solution structure of 3-methyladenine DNA glycosylase I (tag)
Analyse Solution structure of 3-methyladenine DNA glycosylase I (tag) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1LMZ
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-methyladenine DNA glycosylase I (tag)
- EC
- 3.2.2.20
- UniProt
- P05100
- Pockets
- 3 · best druggability 0.71
Structure
solution nmr · 1 distinct chain · 55% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-methyladenine DNA glycosylase I (tag) (EC 3.2.2.20) | protein | 187 | 55% helix, 2% strand | P05100 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.71 | 0.97 | 15 | empty |
| 2 | 313 | 0.65 | 0.81 | 37 | empty |
| 3 | 143 | 0.43 | 0.75 | 29 | empty |
Compared structures
- 1LMZ · Solution Structure of 3-Methyladenine DNA Glycosylase I (TAG) · the same entry in another collection · chain A against A, TM-score 1.00
- P05100 · AlphaFold monomer V2.0 prediction for DNA-3-methyladenine glycosylase 1 (P05100) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05100
- Elsewhere: RCSB PDB 1LMZ · PDBe 1LMZ · UniProt P05100
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