Research workbench
Crystal structure of the competence-damaged protein (cina) superfamily protein ECL_02051 from enterobacter cloacae
Analyse Crystal structure of the competence-damaged protein (cina) superfamily protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5VU3
- Type
- protein
- Length
- 1,344 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Competence damage-inducible protein a
- UniProt
- A0A0H3CM13
- Pockets
- 6 · best druggability 0.78
Structure
x-ray diffraction · 6 distinct chains · 44% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Competence damage-inducible protein a | protein | 169 | 44% helix, 22% strand | A0A0H3CM13 |
| B, F | Competence damage-inducible protein a | protein | 169 | 43% helix, 22% strand | A0A0H3CM13 |
| C | Competence damage-inducible protein a | protein | 166 | 45% helix, 22% strand | A0A0H3CM13 |
| D | Competence damage-inducible protein a | protein | 170 | 45% helix, 22% strand | A0A0H3CM13 |
| E, G | Competence damage-inducible protein a | protein | 168 | 45% helix, 21% strand | A0A0H3CM13 |
| H | Competence damage-inducible protein a | protein | 165 | 44% helix, 21% strand | A0A0H3CM13 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 967 | 0.78 | 0.80 | 103 | empty |
| 2 | 955 | 0.78 | 0.80 | 83 | empty |
| 3 | 1038 | 0.77 | 0.79 | 116 | empty |
| 4 | 756 | 0.73 | 0.78 | 84 | empty |
| 5 | 703 | 0.72 | 0.78 | 86 | empty |
Interfaces
12 interfaces between chains.
- A–B · 1138 Ų buried · 24 hydrogen bonds · protein-protein
- C–D · 1055 Ų buried · 19 hydrogen bonds · protein-protein
- F–H · 993 Ų buried · 26 hydrogen bonds · protein-protein
- E–G · 931 Ų buried · 25 hydrogen bonds · protein-protein
- A–C · 903 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 5VU3 · Crystal structure of the competence-damaged protein (CinA) superfamily protein ECL_02051… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0H3CM13
- Elsewhere: RCSB PDB 5VU3 · PDBe 5VU3 · UniProt A0A0H3CM13
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